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F96A Mutant of Plasmodium Falciparum Triosephosphate Isomerase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1M7P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 293 NaOAc, 10mM Li2SO4, 0.5mM DTT, 0.5mM NaN3, 0.5mM EDTA, 24% PEG 1450
Crystal Properties Matthews coefficient Solvent content 2.08 40.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.42 α = 90 b = 76.84 β = 99.44 c = 76.57 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2010-01-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.36 53.87 92 17 3.6 17068
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.36 2.49 70 0.21 5.4 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1M7P 2.39 53.87 16173 861 94.92 0.22992 0.2276 0.2327 0.27122 0.2739 RANDOM 28.165
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 0.04 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.014 r_dihedral_angle_3_deg 15.111 r_dihedral_angle_4_deg 14.017 r_dihedral_angle_1_deg 5.804 r_long_range_B_refined 3.099 r_long_range_B_other 3.092 r_mcangle_it 1.809 r_mcangle_other 1.809 r_scangle_other 1.318 r_angle_refined_deg 1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.014 r_dihedral_angle_3_deg 15.111 r_dihedral_angle_4_deg 14.017 r_dihedral_angle_1_deg 5.804 r_long_range_B_refined 3.099 r_long_range_B_other 3.092 r_mcangle_it 1.809 r_mcangle_other 1.809 r_scangle_other 1.318 r_angle_refined_deg 1.12 r_mcbond_other 1.053 r_mcbond_it 1.052 r_angle_other_deg 0.897 r_scbond_it 0.753 r_scbond_other 0.752 r_chiral_restr 0.063 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3653 Nucleic Acid Atoms Solvent Atoms 81 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing