5C0R

Crystal Structure of a Generation 3 Influenza Hemagglutinin Stabilized Stem Complexed with the Broadly Neutralizing Antibody C179

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1RU7	1RU7 (5-36, 315-323 chain A, 514-559, 590-660 chain B), 1SZT (3-29, 42-67 chain A), 1Q9K (1-111 chain B), 1UWX (3-108 chain K), 1RFO (1-27, chain A)
experimental model	PDB	1SZT	1RU7 (5-36, 315-323 chain A, 514-559, 590-660 chain B), 1SZT (3-29, 42-67 chain A), 1Q9K (1-111 chain B), 1UWX (3-108 chain K), 1RFO (1-27, chain A)
experimental model	PDB	1Q9K	1RU7 (5-36, 315-323 chain A, 514-559, 590-660 chain B), 1SZT (3-29, 42-67 chain A), 1Q9K (1-111 chain B), 1UWX (3-108 chain K), 1RFO (1-27, chain A)
experimental model	PDB	1UWX	1RU7 (5-36, 315-323 chain A, 514-559, 590-660 chain B), 1SZT (3-29, 42-67 chain A), 1Q9K (1-111 chain B), 1UWX (3-108 chain K), 1RFO (1-27, chain A)
experimental model	PDB	1RFO	1RU7 (5-36, 315-323 chain A, 514-559, 590-660 chain B), 1SZT (3-29, 42-67 chain A), 1Q9K (1-111 chain B), 1UWX (3-108 chain K), 1RFO (1-27, chain A)

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	8.5	293	15% (w/v) PEG 1500, 5% (v/v) MPD, 200 mM ammonium chloride, 100 mM Tris, pH 8.5

Crystal Properties
Matthews coefficient	Solvent content
2.99	58.83

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 112.038	α = 90
b = 112.038	β = 90
c = 205.125	γ = 120

Symmetry
Space Group	H 3

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 225 mm CCD		2010-12-10	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 22-BM	1.000	APS	22-BM

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.188	50	98.25	0.067	19.2	4.5		15742		-3	94.77

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3.188	3.3	87.1		0.413	2.6	3.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Cut-off Sigma (F)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1RU7 (5-36, 315-323 chain A, 514-559, 590-660 chain B), 1SZT (3-29, 42-67 chain A), 1Q9K (1-111 chain B), 1UWX (3-108 chain K), 1RFO (1-27, chain A)	3.188	32.343	1.96	15733	783	98.25	0.2018	0.1992	0.22	0.2506	0.28	Random selection

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
f_dihedral_angle_d	13.448
f_angle_d	0.664
f_chiral_restr	0.028
f_bond_d	0.003
f_plane_restr	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5499
Nucleic Acid Atoms
Solvent Atoms	8
Heterogen Atoms	42

Software

Software
Software Name	Purpose
HKL-2000	data reduction
SCALEPACK	data scaling
PHASER	phasing
MOLREP	phasing
PHENIX	refinement
Coot	model building

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.