5LGW

GlgE isoform 1 from Streptomyces coelicolor D394A mutant co-crystallised with maltodextrin


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3ZST 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293NULL
Crystal Properties
Matthews coefficientSolvent content
3.3363.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 115.11α = 90
b = 115.11β = 90
c = 311.36γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2011-07-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.978DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9581.497.10.0830.99917.513.114782826.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.95279.90.9150.5891.23.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3ZST1.9581.4140419740996.90.1780.17710.1945RANDOM33.996
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.570.57-1.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.886
r_dihedral_angle_4_deg18.852
r_dihedral_angle_3_deg11.791
r_dihedral_angle_1_deg6.03
r_angle_refined_deg1.405
r_mcangle_it1.384
r_angle_other_deg0.929
r_mcbond_it0.857
r_mcbond_other0.856
r_chiral_restr0.081
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.886
r_dihedral_angle_4_deg18.852
r_dihedral_angle_3_deg11.791
r_dihedral_angle_1_deg6.03
r_angle_refined_deg1.405
r_mcangle_it1.384
r_angle_other_deg0.929
r_mcbond_it0.857
r_mcbond_other0.856
r_chiral_restr0.081
r_bond_refined_d0.01
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10224
Nucleic Acid Atoms
Solvent Atoms1145
Heterogen Atoms354

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing
XDSdata reduction