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-TIP microtubule-binding domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UGJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293 100 mM citric acid, pH 5, 1 M NaCl
Crystal Properties Matthews coefficient Solvent content 2.71 54.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.36 α = 90 b = 96.36 β = 90 c = 63.27 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-08-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 68.14 100 23.5 25.5 29557
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1UGJ 1.4 68.14 28088 1469 100 0.1636 0.162 0.1619 0.1916 0.1946 RANDOM 44.873
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.34 1.34 -2.69
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.676 r_dihedral_angle_2_deg 34.919 r_sphericity_bonded 29.966 r_dihedral_angle_4_deg 23.29 r_dihedral_angle_3_deg 11.24 r_dihedral_angle_1_deg 5.304 r_rigid_bond_restr 2.158 r_angle_refined_deg 1.325 r_angle_other_deg 0.923 r_chiral_restr 0.087
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.676 r_dihedral_angle_2_deg 34.919 r_sphericity_bonded 29.966 r_dihedral_angle_4_deg 23.29 r_dihedral_angle_3_deg 11.24 r_dihedral_angle_1_deg 5.304 r_rigid_bond_restr 2.158 r_angle_refined_deg 1.325 r_angle_other_deg 0.923 r_chiral_restr 0.087 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 894 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing