X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1N2Z 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293.15HEPES sodium pH 7.0 PEG3350 Tryptone
Crystal Properties
Matthews coefficientSolvent content
2.6152.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 138.15α = 90
b = 90.56β = 110.9
c = 50.84γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray123PIXELDECTRIS PILATUS 6M-F2013-09-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.00001SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.529.3996.020.05910.163.589615
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.690.849

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1N2Z1.529.3985134448196.020.180730.179030.21296RANDOM31.424
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.480.49-1.93-1.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.372
r_dihedral_angle_4_deg19.224
r_dihedral_angle_3_deg12.879
r_long_range_B_other8.908
r_long_range_B_refined8.904
r_dihedral_angle_1_deg6.76
r_scangle_other5.933
r_mcangle_it4.286
r_mcangle_other4.286
r_scbond_it3.867
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.372
r_dihedral_angle_4_deg19.224
r_dihedral_angle_3_deg12.879
r_long_range_B_other8.908
r_long_range_B_refined8.904
r_dihedral_angle_1_deg6.76
r_scangle_other5.933
r_mcangle_it4.286
r_mcangle_other4.286
r_scbond_it3.867
r_scbond_other3.867
r_mcbond_it2.927
r_mcbond_other2.921
r_angle_refined_deg2.228
r_angle_other_deg0.909
r_chiral_restr0.224
r_bond_refined_d0.019
r_gen_planes_refined0.01
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3548
Nucleic Acid Atoms
Solvent Atoms532
Heterogen Atoms160

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXrefinement
XSCALEdata scaling
XDSdata reduction
PHENIXphasing