X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29824 % PEG 1500 AND 0.05 M TBG (SODIUM TARTRATE/BIS - TRIS/GLYCYLGLYCINE) PH 4
Crystal Properties
Matthews coefficientSolvent content
2.7555.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.047α = 90
b = 108.047β = 90
c = 92.571γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M-F2014-09-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06DASLSX06DA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.646.661009999.217411

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFREE R-VALUE2.646.661654087199.940.182980.180550.22928copied from 5a5z42.719
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.090.09-0.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.371
r_dihedral_angle_4_deg20.329
r_dihedral_angle_3_deg15.052
r_dihedral_angle_1_deg6.626
r_long_range_B_refined3.989
r_long_range_B_other3.987
r_scangle_other2.14
r_mcangle_it1.68
r_mcangle_other1.68
r_angle_refined_deg1.504
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.371
r_dihedral_angle_4_deg20.329
r_dihedral_angle_3_deg15.052
r_dihedral_angle_1_deg6.626
r_long_range_B_refined3.989
r_long_range_B_other3.987
r_scangle_other2.14
r_mcangle_it1.68
r_mcangle_other1.68
r_angle_refined_deg1.504
r_scbond_it1.353
r_scbond_other1.34
r_angle_other_deg1.165
r_mcbond_it0.988
r_mcbond_other0.988
r_chiral_restr0.084
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_bond_other_d0.005
r_gen_planes_other0.005
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3441
Nucleic Acid Atoms
Solvent Atoms109
Heterogen Atoms61

Software

Software
Software NamePurpose
REFMACrefinement