X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4OU9MR-SAD

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP281Sodium polyacrylate, HEPES, pH 6.5
Crystal Properties
Matthews coefficientSolvent content
2.7755.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.908α = 90
b = 100.908β = 90
c = 448.815γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2016-04-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C1.72200APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.16550.1489.80.1571717.4128129
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.172.356.21.7110.937.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4OU92.16550.138128085632389.8130.1820.18070.2055RANDOM40.645
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.5820.2910.582-1.887
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.561
r_dihedral_angle_3_deg11.941
r_dihedral_angle_1_deg7.173
r_lrange_it5.752
r_lrange_other5.731
r_scangle_it4.138
r_scangle_other4.137
r_mcangle_other3.099
r_mcangle_it3.097
r_scbond_it2.436
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.561
r_dihedral_angle_3_deg11.941
r_dihedral_angle_1_deg7.173
r_lrange_it5.752
r_lrange_other5.731
r_scangle_it4.138
r_scangle_other4.137
r_mcangle_other3.099
r_mcangle_it3.097
r_scbond_it2.436
r_scbond_other2.435
r_mcbond_it1.92
r_mcbond_other1.92
r_dihedral_angle_2_deg1.352
r_angle_refined_deg0.921
r_angle_other_deg0.315
r_nbd_other0.227
r_nbd_refined0.186
r_symmetry_nbd_other0.183
r_nbtor_refined0.178
r_xyhbond_nbd_refined0.136
r_symmetry_nbd_refined0.131
r_symmetry_xyhbond_nbd_refined0.125
r_symmetry_xyhbond_nbd_other0.108
r_symmetry_nbtor_other0.078
r_ncsr_local_group_30.056
r_ncsr_local_group_10.054
r_ncsr_local_group_60.052
r_ncsr_local_group_20.05
r_ncsr_local_group_40.05
r_ncsr_local_group_50.05
r_chiral_restr0.046
r_chiral_restr_other0.016
r_metal_ion_refined0.008
r_gen_planes_refined0.004
r_bond_refined_d0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms15941
Nucleic Acid Atoms
Solvent Atoms1142
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing