5UGK
Zinc-Binding Structure of a Catalytic Amyloid from Solid-State NMR Spectroscopy
SOLID-STATE NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 13C-13C correlation spectra | 0.4 g/L [U-13C; U-15N] IVL | pH 8 Tris buffer | 100 mM | 8 | 1 atm | 298 | Bruker Bruker 800 |
2 | 2D 15N-13C correlation spectra | 0.4 g/L [U-13C; U-15N] IVL | pH 8 Tris buffer | 100 mM | 8 | 1 atm | 298 | Bruker Bruker 800 |
3 | REDOR | 0.4 g/L [U-13C; U-15N] IVL | pH 8 Tris buffer | 100 mM | 8 | 1 atm | 298 | Bruker Bruker 800 |
4 | 2D 13C-13C correlation spectra | 0.4 g/L [U-13C] mixed sample | pH 8 Tris buffer | 100 mM | 8 | 1 atm | 298 | Bruker Bruker 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | Bruker | 800 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
6 | chemical shift assignment | TopSpin | Bruker Biospin | |
2 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
7 | data analysis | TALOS | Cornilescu, Delaglio and Bax |