X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3ENJ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2980.2 NaTartrate pH 7.85, 20% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.1442.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.575α = 99.6
b = 59.884β = 98.47
c = 74.761γ = 117.53
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2013-11-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-BM1APS22-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.650.0196.60.0610.0610.0680.04619.952.2104042-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6394.90.3440.3440.530.3590.7332.172.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3ENJ1.634104042548196.60.153840.152530.17844RANDOM21.29
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.490.04-0.05-0.10.12-0.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.577
r_dihedral_angle_4_deg18.421
r_dihedral_angle_3_deg12.703
r_dihedral_angle_1_deg5.432
r_long_range_B_refined4.619
r_long_range_B_other4.257
r_angle_other_deg3.604
r_scangle_other2.197
r_mcangle_it1.631
r_mcangle_other1.631
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.577
r_dihedral_angle_4_deg18.421
r_dihedral_angle_3_deg12.703
r_dihedral_angle_1_deg5.432
r_long_range_B_refined4.619
r_long_range_B_other4.257
r_angle_other_deg3.604
r_scangle_other2.197
r_mcangle_it1.631
r_mcangle_other1.631
r_angle_refined_deg1.584
r_scbond_it1.347
r_scbond_other1.347
r_mcbond_it0.959
r_mcbond_other0.959
r_chiral_restr0.104
r_bond_refined_d0.013
r_gen_planes_other0.011
r_gen_planes_refined0.008
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6849
Nucleic Acid Atoms
Solvent Atoms1058
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
HKL-3000phasing
MOLREPphasing