5X1B

CO bound cytochrome c oxidase at 20 nsec after pump laser irradiation to release CO from O2 reduction center


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE6.827740 mM sodium phosphate, 0.2% decyl maltoside, 2% ethylene glycol, PEG 4000
Crystal Properties
Matthews coefficientSolvent content
4.2671.13

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 185.849α = 90
b = 209.485β = 90
c = 179.524γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray277CCDRAYONIX MX225HE2015-06-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1FREE ELECTRON LASERSACLA BEAMLINE BL31.24020SACLABL3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.414.9998.20.16240.95766.2863.23266141
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.4479.60.41310.49674.61

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.4152524891356997.670.18430.18190.2296RANDOM72.697
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.894.94-4.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.898
r_dihedral_angle_3_deg18.114
r_dihedral_angle_4_deg17.423
r_dihedral_angle_1_deg6.641
r_angle_refined_deg1.832
r_chiral_restr0.114
r_bond_refined_d0.013
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms28506
Nucleic Acid Atoms
Solvent Atoms972
Heterogen Atoms2236

Software

Software
Software NamePurpose
REFMACrefinement
cctbx.xfeldata processing
cctbx.primedata scaling
REFMACphasing