X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP82951.0 M sodium citrate, 0.1 M Imidazole pH 8.0
Crystal Properties
Matthews coefficientSolvent content
2.9458.15

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 93.398α = 90
b = 211.4β = 90
c = 82.639γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-3002017-09-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSRRC BEAMLINE BL15A11.0NSRRCBL15A1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.792599.90.0440.0510.02410.74.376749
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.791.8599.30.2550.2910.1390.9544.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT1.792572853387699.70.111920.108890.17062RANDOM24.163
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.99-0.36-0.62
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free39.883
r_dihedral_angle_2_deg35.559
r_sphericity_bonded17.385
r_dihedral_angle_4_deg16.506
r_dihedral_angle_3_deg14.651
r_long_range_B_refined7.129
r_scangle_other7.104
r_long_range_B_other6.83
r_scbond_it6.692
r_scbond_other6.692
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free39.883
r_dihedral_angle_2_deg35.559
r_sphericity_bonded17.385
r_dihedral_angle_4_deg16.506
r_dihedral_angle_3_deg14.651
r_long_range_B_refined7.129
r_scangle_other7.104
r_long_range_B_other6.83
r_scbond_it6.692
r_scbond_other6.692
r_mcangle_other5.964
r_mcangle_it5.952
r_dihedral_angle_1_deg5.889
r_rigid_bond_restr5.752
r_mcbond_it5.224
r_mcbond_other5.187
r_angle_refined_deg1.5
r_angle_other_deg0.778
r_chiral_restr0.104
r_gen_planes_refined0.013
r_bond_refined_d0.011
r_gen_planes_other0.002
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4884
Nucleic Acid Atoms
Solvent Atoms720
Heterogen Atoms49

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
SOLVEphasing