X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3Q6X 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72950.1M HEPES pH7.0, 25% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
1.9236.01

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.762α = 90
b = 73.496β = 98.13
c = 66.448γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2011-06-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U10.97922SSRFBL17U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.555097.50.0698.23.755127
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.6195.70.4413.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3Q6X1.555052315279096.930.11990.11790.1579RANDOM21.17
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.12-1.030.96
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.582
r_sphericity_free25.109
r_dihedral_angle_4_deg15.773
r_dihedral_angle_3_deg12.511
r_dihedral_angle_1_deg6.229
r_sphericity_bonded5.752
r_angle_refined_deg1.429
r_angle_other_deg0.927
r_rigid_bond_restr0.79
r_chiral_restr0.121
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.582
r_sphericity_free25.109
r_dihedral_angle_4_deg15.773
r_dihedral_angle_3_deg12.511
r_dihedral_angle_1_deg6.229
r_sphericity_bonded5.752
r_angle_refined_deg1.429
r_angle_other_deg0.927
r_rigid_bond_restr0.79
r_chiral_restr0.121
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3572
Nucleic Acid Atoms
Solvent Atoms541
Heterogen Atoms39

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction