6AOS

Crystal structure of the A/Brisbane/10/2007 (H3N2) influenza virus hemagglutinin L194P mutant in complex with 3'-SLNLN


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4O5N 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP10.52930.1 M CAPS pH 10.5 and 29% PEG 400
Crystal Properties
Matthews coefficientSolvent content
3.3363.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.401α = 90
b = 100.401β = 90
c = 383.34γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-01-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL12-20.9795SSRLBL12-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.35097.20.120.05122.66.93286142
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.3796.40.860.340.821.66.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4O5N2.35030895160997.090.207980.205690.25173RANDOM56.472
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.40.71.4-4.55
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.652
r_dihedral_angle_4_deg17.5
r_dihedral_angle_3_deg15.367
r_long_range_B_refined6.513
r_long_range_B_other6.51
r_dihedral_angle_1_deg6.366
r_scangle_other3.358
r_scbond_it1.919
r_scbond_other1.919
r_mcangle_it1.865
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.652
r_dihedral_angle_4_deg17.5
r_dihedral_angle_3_deg15.367
r_long_range_B_refined6.513
r_long_range_B_other6.51
r_dihedral_angle_1_deg6.366
r_scangle_other3.358
r_scbond_it1.919
r_scbond_other1.919
r_mcangle_it1.865
r_mcangle_other1.865
r_angle_refined_deg1.537
r_mcbond_it1.083
r_mcbond_other1.083
r_angle_other_deg0.944
r_chiral_restr0.082
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3866
Nucleic Acid Atoms
Solvent Atoms131
Heterogen Atoms219

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data processing
HKL-2000data scaling
PHASERphasing