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Crystal structure of Cryptosporidium parvum bromodomain cgd2_2690
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4Z93
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 2.5M NH4SO4 and 0.1M BTP 7.0
Crystal Properties Matthews coefficient Solvent content 2.27 45.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.543 α = 90 b = 71.422 β = 90 c = 98.274 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97887 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.38 50 100 0.085 0.091 0.031 6.7 8.2 49181
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.38 1.4 100 0.969 1.042 0.379 0.699 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4Z93 1.38 50.01 46541 1515 99.99 0.177 0.1762 0.1999 0.2021 RANDOM 17.809
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.3 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.574 r_dihedral_angle_3_deg 12.071 r_dihedral_angle_4_deg 9.296 r_dihedral_angle_1_deg 5.081 r_angle_refined_deg 1.323 r_angle_other_deg 0.818 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.574 r_dihedral_angle_3_deg 12.071 r_dihedral_angle_4_deg 9.296 r_dihedral_angle_1_deg 5.081 r_angle_refined_deg 1.323 r_angle_other_deg 0.818 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1703 Nucleic Acid Atoms Solvent Atoms 297 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement PHASER phasing PDB_EXTRACT data extraction HKL-3000 data reduction HKL-3000 data scaling