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SAMHD1 Bound to Cladribine-TP in the Catalytic Pocket and Allosteric Pocket
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 298 100 MM BIS-TRIS PH 6.7 AND 25% (W/V) PEG1500
Crystal Properties Matthews coefficient Solvent content 2.02 39.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.324 α = 90 b = 142.272 β = 114.08 c = 98.438 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97920 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 89.87 95.1 0.08 0.999 12.6 3 129994
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 87.7 0.682 0.518 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.99 89.87 123471 6512 94.95 0.17098 0.16933 0.1771 0.20202 0.2073 RANDOM 31.635
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.67 -0.07 0.04 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.294 r_dihedral_angle_4_deg 17.485 r_dihedral_angle_3_deg 15.869 r_long_range_B_refined 6.86 r_long_range_B_other 6.796 r_dihedral_angle_1_deg 5.727 r_scangle_other 3.277 r_mcangle_it 2.688 r_mcangle_other 2.688 r_angle_refined_deg 2.154
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.294 r_dihedral_angle_4_deg 17.485 r_dihedral_angle_3_deg 15.869 r_long_range_B_refined 6.86 r_long_range_B_other 6.796 r_dihedral_angle_1_deg 5.727 r_scangle_other 3.277 r_mcangle_it 2.688 r_mcangle_other 2.688 r_angle_refined_deg 2.154 r_scbond_other 1.997 r_scbond_it 1.995 r_mcbond_it 1.586 r_mcbond_other 1.586 r_angle_other_deg 1.123 r_chiral_restr 0.128 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15732 Nucleic Acid Atoms Solvent Atoms 868 Heterogen Atoms 385
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing