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TRANSCRIPTIONAL REPRESSOR ETHR FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH BDM43265
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U9N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.7 293 1.4-1.6 ammonium sulfate, 15% glycerol, 100 mM MES
Crystal Properties Matthews coefficient Solvent content 2.39 48.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.332 α = 90 b = 121.332 β = 90 c = 33.729 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 42.9 99.9 0.164 13.2 7.8 10339
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 99.1 0.917 2.3 7.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1U9N 2.4 42.9 9788 516 99.84 0.19893 0.19614 0.2042 0.25122 0.2489 RANDOM 30.002
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.03 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.103 r_dihedral_angle_4_deg 16.294 r_dihedral_angle_3_deg 15.535 r_long_range_B_refined 5.22 r_long_range_B_other 5.218 r_dihedral_angle_1_deg 5.116 r_scangle_other 4.106 r_mcangle_it 2.943 r_mcangle_other 2.942 r_scbond_it 2.647
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.103 r_dihedral_angle_4_deg 16.294 r_dihedral_angle_3_deg 15.535 r_long_range_B_refined 5.22 r_long_range_B_other 5.218 r_dihedral_angle_1_deg 5.116 r_scangle_other 4.106 r_mcangle_it 2.943 r_mcangle_other 2.942 r_scbond_it 2.647 r_scbond_other 2.646 r_mcbond_it 1.932 r_mcbond_other 1.92 r_angle_refined_deg 1.524 r_angle_other_deg 1.351 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1490 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction MOLREP phasing