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Structure of human PARG complexed with JA2131
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 20% PEG 3350, 0.05 M PCTP pH 7.5, 0.1 M NaCl, 0.15 M MgCl2
Crystal Properties Matthews coefficient Solvent content 2.25 45.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.675 α = 90 b = 65.948 β = 95.44 c = 88.598 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2013-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 97.3 11.8 3.8 37412
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.949
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 30 37404 1983 97.13 0.18067 0.17835 0.1873 0.22479 0.2333 RANDOM 25.432
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.3 -0.31 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.757 r_dihedral_angle_4_deg 17.901 r_dihedral_angle_3_deg 14.714 r_dihedral_angle_1_deg 7.184 r_long_range_B_refined 4.831 r_long_range_B_other 4.785 r_scangle_other 3.414 r_mcangle_it 2.679 r_mcangle_other 2.678 r_scbond_it 2.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.757 r_dihedral_angle_4_deg 17.901 r_dihedral_angle_3_deg 14.714 r_dihedral_angle_1_deg 7.184 r_long_range_B_refined 4.831 r_long_range_B_other 4.785 r_scangle_other 3.414 r_mcangle_it 2.679 r_mcangle_other 2.678 r_scbond_it 2.21 r_scbond_other 2.21 r_angle_refined_deg 1.771 r_mcbond_it 1.743 r_mcbond_other 1.742 r_angle_other_deg 1.083 r_chiral_restr 0.097 r_bond_refined_d 0.016 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4010 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing