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The crystal structure of glycogen phosphorylase in complex with 12
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SMALL TUBES 6.7 289 10 mM BES buffer, pH 6.7
Crystal Properties Matthews coefficient Solvent content 2.54 51.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.165 α = 90 b = 128.165 β = 90 c = 115.879 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD AGILENT ATLAS CCD 2018-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION SUPERNOVA 1.5419
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.43 13.52 90 0.076 0.997 16.5 5.9 32703
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.43 2.53 78.6 0.419 0.901 3.1 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.43 13.52 31039 1595 88.37 0.15454 0.15164 0.1622 0.21106 0.2153 RANDOM 27.161
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.18 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.535 r_dihedral_angle_4_deg 19.778 r_dihedral_angle_3_deg 15.647 r_dihedral_angle_1_deg 7.035 r_long_range_B_refined 3.914 r_long_range_B_other 3.903 r_scangle_other 2.489 r_mcangle_it 1.956 r_mcangle_other 1.956 r_angle_refined_deg 1.517
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.535 r_dihedral_angle_4_deg 19.778 r_dihedral_angle_3_deg 15.647 r_dihedral_angle_1_deg 7.035 r_long_range_B_refined 3.914 r_long_range_B_other 3.903 r_scangle_other 2.489 r_mcangle_it 1.956 r_mcangle_other 1.956 r_angle_refined_deg 1.517 r_scbond_it 1.46 r_scbond_other 1.459 r_angle_other_deg 1.297 r_mcbond_other 1.144 r_mcbond_it 1.143 r_chiral_restr 0.071 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6589 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling REFMAC phasing