X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2850.1 M sodium acetate pH 4.5, 16 % (w/v) PEG 3000, 0.036 mM lyso-Foscholine14
Crystal Properties
Matthews coefficientSolvent content
2.1643.05

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.814α = 90
b = 80.014β = 90
c = 88.912γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2018-09-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.976247ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.095099.50.07616.212.7101774
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.091.1698.40.434.712.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.094599673210099.550.10750.10690.137RANDOM13.219
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.26-0.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.963
r_sphericity_free27.42
r_dihedral_angle_4_deg15.522
r_sphericity_bonded12.675
r_dihedral_angle_3_deg11.204
r_dihedral_angle_1_deg6.782
r_rigid_bond_restr6.272
r_angle_refined_deg2.206
r_angle_other_deg1.545
r_chiral_restr0.193
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.963
r_sphericity_free27.42
r_dihedral_angle_4_deg15.522
r_sphericity_bonded12.675
r_dihedral_angle_3_deg11.204
r_dihedral_angle_1_deg6.782
r_rigid_bond_restr6.272
r_angle_refined_deg2.206
r_angle_other_deg1.545
r_chiral_restr0.193
r_bond_refined_d0.027
r_gen_planes_refined0.012
r_gen_planes_other0.006
r_bond_other_d0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1983
Nucleic Acid Atoms
Solvent Atoms368
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling
PHASERphasing