X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1COUNTER-DIFFUSION294SA 1.4 M
Crystal Properties
Matthews coefficientSolvent content
5.2476.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 158.73α = 90
b = 158.73β = 90
c = 105.67γ = 120
Symmetry
Space GroupP 63 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2016-12-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL41XU0.8SPring-8BL41XU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.933098.980.13714.7531.5958550
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.932.0394.490.312.3815.13

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.9327.9355566295998.880.11380.11220.1449RANDOM17.73
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.04-0.02-0.040.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.033
r_dihedral_angle_4_deg16.829
r_dihedral_angle_3_deg12.881
r_dihedral_angle_1_deg7.236
r_rigid_bond_restr4.527
r_angle_refined_deg1.951
r_angle_other_deg1.61
r_chiral_restr0.1
r_bond_refined_d0.02
r_gen_planes_refined0.011
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.033
r_dihedral_angle_4_deg16.829
r_dihedral_angle_3_deg12.881
r_dihedral_angle_1_deg7.236
r_rigid_bond_restr4.527
r_angle_refined_deg1.951
r_angle_other_deg1.61
r_chiral_restr0.1
r_bond_refined_d0.02
r_gen_planes_refined0.011
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2581
Nucleic Acid Atoms
Solvent Atoms322
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing