6TCG
2'-F-riboguanosine and 2'-F-arabinoguanosine modified G-quadruplex with V-loop and all-syn G-tract
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.4 mM F14A15 | 90% H2O/10% D2O | 20 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 600 |
2 | 2D 1H-1H NOESY | 0.4 mM F14A15 | 100% D2O | 20 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 600 |
3 | 2D DQF-COSY | 0.4 mM F14A15 | 100% D2O | 20 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 600 |
4 | 2D 1H-1H TOCSY | 0.4 mM F14A15 | 100% D2O | 20 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 600 |
5 | 2D 1H-13C HSQC aromatic | 0.4 mM F14A15 | 90% H2O/10% D2O | 20 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 600 |
6 | 2D 19F-1H HOESY | 0.4 mM F14A15 | 90% H2O/10% D2O | 20 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE NEO | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH | |
molecular dynamics | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | all calculated structures submitted |
Conformers Calculated Total Number | 10 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | chemical shift assignment | CcpNmr Analysis | CCPN | |
4 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
5 | structure calculation | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |