X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4UHIPDB entry 4UHI

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.4293PEG3350, HEGA-11, potassium phosphate, lanosterol
Crystal Properties
Matthews coefficientSolvent content
2.8556.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.18α = 90
b = 165.07β = 90
c = 154.03γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2019-07-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D1.1271APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9843.689.60.05616.18.66867245.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.982.0352.80.9341.15.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 4UHI1.9843.668672379289.580.19270.1910.2221RANDOM53.135
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.2-0.44-1.75
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.475
r_dihedral_angle_3_deg16.922
r_dihedral_angle_4_deg16.078
r_dihedral_angle_1_deg6.782
r_rigid_bond_restr6.227
r_angle_other_deg1.387
r_angle_refined_deg1.374
r_chiral_restr0.071
r_gen_planes_refined0.014
r_gen_planes_other0.011
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.475
r_dihedral_angle_3_deg16.922
r_dihedral_angle_4_deg16.078
r_dihedral_angle_1_deg6.782
r_rigid_bond_restr6.227
r_angle_other_deg1.387
r_angle_refined_deg1.374
r_chiral_restr0.071
r_gen_planes_refined0.014
r_gen_planes_other0.011
r_bond_other_d0.009
r_bond_refined_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7127
Nucleic Acid Atoms
Solvent Atoms515
Heterogen Atoms148

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing