X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1EFL 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION2938.64% PEG 20000, 2.4% MPD, 100mM MES
Crystal Properties
Matthews coefficientSolvent content
2.5752.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 204.508α = 90
b = 58.443β = 129.64
c = 141.82γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102018-05-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSRRC BEAMLINE BL13C11NSRRCBL13C1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.463099.90.0610.0720.0379.63.746913
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.482.5799.80.620.7250.3740.8523.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1efl2.4829.438702198885.880.24080.2390.2772RANDOM38.675
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.050.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.078
r_dihedral_angle_4_deg17.25
r_dihedral_angle_3_deg16.064
r_dihedral_angle_1_deg6.471
r_angle_refined_deg1.496
r_angle_other_deg1.185
r_chiral_restr0.052
r_gen_planes_refined0.005
r_bond_refined_d0.004
r_bond_other_d0.003
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.078
r_dihedral_angle_4_deg17.25
r_dihedral_angle_3_deg16.064
r_dihedral_angle_1_deg6.471
r_angle_refined_deg1.496
r_angle_other_deg1.185
r_chiral_restr0.052
r_gen_planes_refined0.005
r_bond_refined_d0.004
r_bond_other_d0.003
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8736
Nucleic Acid Atoms
Solvent Atoms15
Heterogen Atoms210

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PDB_EXTRACTdata extraction
PHENIXphasing