7O9U
Solution structure of oxidized cytochrome c552 from Thioalkalivibrio paradoxus
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
2 | 2D 1H-13C HSQC aliphatic | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
3 | 2D 1H-13C HSQC aromatic | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
4 | 3D 1H-15N NOESY | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
16 | 3D 1H-15N NOESY | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 800 |
5 | 3D 1H-15N TOCSY | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
6 | 3D 1H-13C NOESY aliphatic | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
7 | 3D HNCA | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
8 | 3D HN(CO)CA | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
9 | 3D HNCO | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
10 | 3D HCACO | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
11 | 3D HNHA | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
12 | 3D HCCH-TOCSY | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
13 | 3D HNCACB | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
14 | 3D HBHA(CO)NH | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
15 | 3D H(CCO)NH | 0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
17 | 2D 1H-1H NOESY | 0.6 mM Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
18 | 2D 1H-1H TOCSY | 0.6 mM Cytochrome c552 | 95% H2O/5% D2O | 50 mM | 7.0 | 1 atm | 303 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
2 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 3.2 | Bruker Biospin |
2 | processing | TopSpin | 3.2 | Bruker Biospin |
3 | data analysis | CcpNmr Analysis | CCPN | |
4 | peak picking | CcpNmr Analysis | CCPN | |
5 | chemical shift assignment | ARIA | 2.3 | Linge, O'Donoghue and Nilges |
6 | structure calculation | CNS | 1.21 | Brunger, Adams, Clore, Gros, Nilges and Read |
7 | refinement | X-PLOR NIH | 3.2 | Schwieters, Kuszewski, Tjandra and Clore |