X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1C1P 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION29330% PEG4K; 0.2 M ammonium sulfate
Crystal Properties
Matthews coefficientSolvent content
1.9938.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.522α = 90
b = 54.522β = 90
c = 108.199γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-11-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 11.04SOLEILPROXIMA 1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.0941.221000.9958.25.478462
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.091.110.7612.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1C1P1.0941.2274447394599.950.112620.111410.1362RANDOM15.741
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.05-0.02-0.050.15
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free39.937
r_dihedral_angle_2_deg37.838
r_dihedral_angle_4_deg18.916
r_sphericity_bonded11.41
r_dihedral_angle_3_deg10.388
r_dihedral_angle_1_deg6.689
r_long_range_B_other4.719
r_long_range_B_refined4.696
r_rigid_bond_restr4.437
r_scangle_other2.548
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free39.937
r_dihedral_angle_2_deg37.838
r_dihedral_angle_4_deg18.916
r_sphericity_bonded11.41
r_dihedral_angle_3_deg10.388
r_dihedral_angle_1_deg6.689
r_long_range_B_other4.719
r_long_range_B_refined4.696
r_rigid_bond_restr4.437
r_scangle_other2.548
r_scbond_it2.164
r_scbond_other2.149
r_angle_refined_deg1.813
r_mcangle_it1.582
r_mcangle_other1.582
r_mcbond_other1.256
r_mcbond_it1.255
r_angle_other_deg0.897
r_chiral_restr0.112
r_bond_refined_d0.015
r_gen_planes_refined0.01
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1629
Nucleic Acid Atoms
Solvent Atoms290
Heterogen Atoms56

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing