7RIK
Magic-Angle-Spinning NMR Structure of Kinesin-1 Motor Domain Assembled with Microtubules
SOLID-STATE NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 13C-detected CORD | 9.1 % w/w [U-100% 13C; U-100% 15N] Apo-Kif5b, 16.4 % w/w Porcine-alpha-tubulin, 16.4 % w/w Porcine-beta-tubulin, 5 uM TAXOL, 1 mM GUANOSINE-5'-TRIPHOSPHATE, 1 mM GUANOSINE-5'-DIPHOSPHATE, 58.1 % w/w Buffer | 100% H2O | 100 mM | 7.4 | 1 atm | 283 | Bruker AVANCE III 850 |
2 | 2D 13C-detected CORD | 9.1 % w/w [U-100% 13C; U-100% 15N] Apo-Kif5b, 16.4 % w/w Porcine-alpha-tubulin, 16.4 % w/w Porcine-beta-tubulin, 5 uM TAXOL, 1 mM GUANOSINE-5'-TRIPHOSPHATE, 1 mM GUANOSINE-5'-DIPHOSPHATE, 58.1 % w/w Buffer | 100% H2O | 100 mM | 7.4 | 1 atm | 283 | Bruker AVANCE NEO 600 |
3 | 2D 13C-detected CORD | 8.2 % w/w [1,6-13C-glucose; U-100% 15N] Apo-Kif5b, 16.4 % w/w Porcine-alpha-tubulin, 16.4 % w/w Porcine-beta-tubulin, 5 uM TAXOL, 1 mM GUANOSINE-5'-TRIPHOSPHATE, 1 mM GUANOSINE-5'-DIPHOSPHATE, 59 % w/w Buffer | 100% H2O | 100 mM | 7.4 | 1 atm | 283 | Bruker AVANCE III 850 |
4 | 2D 13C-detected CORD | 7.6 % w/w [2-13C-glucose; U-100% 15N] Apo-Kif5b, 16.4 % w/w Porcine-alpha-tubulin, 16.4 % w/w Porcine-beta-tubulin, 5 uM TAXOL, 1 mM GUANOSINE-5'-TRIPHOSPHATE, 1 mM GUANOSINE-5'-DIPHOSPHATE, 59.6 % w/w Buffer | 100% H2O | 100 mM | 7.4 | 1 atm | 283 | Bruker AVANCE NEO 600 |
5 | 2D NCACX | 9.1 % w/w [U-100% 13C; U-100% 15N] Apo-Kif5b, 16.4 % w/w Porcine-alpha-tubulin, 16.4 % w/w Porcine-beta-tubulin, 5 uM TAXOL, 1 mM GUANOSINE-5'-TRIPHOSPHATE, 1 mM GUANOSINE-5'-DIPHOSPHATE, 58.1 % w/w Buffer | 100% H2O | 100 mM | 7.4 | 1 atm | 283 | Bruker AVANCE NEO 600 |
7 | 3D NCACX | 9.1 % w/w [U-100% 13C; U-100% 15N] Apo-Kif5b, 16.4 % w/w Porcine-alpha-tubulin, 16.4 % w/w Porcine-beta-tubulin, 5 uM TAXOL, 1 mM GUANOSINE-5'-TRIPHOSPHATE, 1 mM GUANOSINE-5'-DIPHOSPHATE, 58.1 % w/w Buffer | 100% H2O | 100 mM | 7.4 | 1 atm | 283 | Bruker AVANCE NEO 600 |
6 | 3D NCOCX | 9.1 % w/w [U-100% 13C; U-100% 15N] Apo-Kif5b, 16.4 % w/w Porcine-alpha-tubulin, 16.4 % w/w Porcine-beta-tubulin, 5 uM TAXOL, 1 mM GUANOSINE-5'-TRIPHOSPHATE, 1 mM GUANOSINE-5'-DIPHOSPHATE, 58.1 % w/w Buffer | 100% H2O | 100 mM | 7.4 | 1 atm | 283 | Bruker AVANCE NEO 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 850 |
2 | Bruker | AVANCE NEO | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | torsion angle dynamics | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 22000 |
Conformers Submitted Total Number | 22 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | peak picking | CcpNmr Analysis | CCPN | |
5 | chemical shift assignment | CcpNmr Analysis | CCPN | |
6 | chemical shift calculation | TALOS-N | Cornilescu, Delaglio and Bax | |
7 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
8 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |