8BAJ

Structure of the FK1 domain of the FKBP51 G64S variant in complex with (1S,5S,6R)-10-((3,5-dichlorophenyl)sulfonyl)-5-(hydroxymethyl)-3-(pyridin-2-ylmethyl)-3,10-diazabicyclo[4.3.1]decan-2-one

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5OBK

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.5	293	40% PEG3350 0.1M HEPES-NaOH pH 7.5 0.2M ammonium acetate

Crystal Properties
Matthews coefficient	Solvent content
2.24	45.21

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 40.856	α = 90
b = 54.242	β = 90
c = 56.864	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 S 6M		2022-03-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.1	0.9184	BESSY	14.1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.2	40.86	98.4	0.115	0.134	0.068	0.993	5.7	6.8		39512

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.2	1.22			1.362	1.597	0.824	0.559		6.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	5OBK	1.2	39.28	39464	1941	98.086	0.177	0.1751	0.2096	13.269

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.963			-1.889		-0.074

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.899
r_dihedral_angle_3_deg	12.238
r_dihedral_angle_1_deg	7.237
r_dihedral_angle_2_deg	5.639
r_rigid_bond_restr	4.658
r_lrange_it	3.626
r_lrange_other	3.183
r_scangle_it	2.769
r_scangle_other	2.768
r_scbond_it	2.392
r_scbond_other	2.389
r_mcangle_it	2.17
r_mcangle_other	2.168
r_mcbond_other	1.782
r_mcbond_it	1.781
r_angle_refined_deg	1.713
r_angle_other_deg	0.591
r_chiral_restr	0.286
r_symmetry_nbd_refined	0.229
r_nbd_refined	0.205
r_symmetry_nbd_other	0.188
r_nbtor_refined	0.177
r_symmetry_xyhbond_nbd_refined	0.167
r_nbd_other	0.152
r_xyhbond_nbd_refined	0.116
r_symmetry_nbtor_other	0.084
r_chiral_restr_other	0.036
r_bond_refined_d	0.011
r_gen_planes_refined	0.01
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	940
Nucleic Acid Atoms
Solvent Atoms	156
Heterogen Atoms	31

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing