X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4TW7 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29318% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammonium acetate
Crystal Properties
Matthews coefficientSolvent content
2.2745.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.625α = 90
b = 48.493β = 90
c = 57.474γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2019-06-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.918400BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3337.09199.70.0510.0620.0340.99612.15.829884
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.331.350.9241.1850.730.5854.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.3337.09129834152399.5860.1670.16540.200718.489
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.464-2.1412.605
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.454
r_dihedral_angle_3_deg13.31
r_dihedral_angle_1_deg8.202
r_rigid_bond_restr4.994
r_lrange_it4.203
r_dihedral_angle_2_deg3.953
r_lrange_other3.595
r_mcangle_it2.499
r_mcangle_other2.497
r_scangle_it2.375
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.454
r_dihedral_angle_3_deg13.31
r_dihedral_angle_1_deg8.202
r_rigid_bond_restr4.994
r_lrange_it4.203
r_dihedral_angle_2_deg3.953
r_lrange_other3.595
r_mcangle_it2.499
r_mcangle_other2.497
r_scangle_it2.375
r_scangle_other2.373
r_angle_refined_deg1.916
r_mcbond_other1.81
r_mcbond_it1.809
r_scbond_it1.777
r_scbond_other1.775
r_chiral_restr_other1.358
r_angle_other_deg1.232
r_symmetry_nbd_refined0.479
r_nbd_other0.25
r_symmetry_xyhbond_nbd_refined0.194
r_nbd_refined0.19
r_symmetry_nbd_other0.183
r_nbtor_refined0.18
r_xyhbond_nbd_refined0.135
r_chiral_restr0.092
r_symmetry_nbtor_other0.083
r_bond_refined_d0.014
r_gen_planes_refined0.011
r_bond_other_d0.005
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms950
Nucleic Acid Atoms
Solvent Atoms151
Heterogen Atoms54

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
Aimlessdata scaling
PHASERphasing