8CCD

The Fk1 domain of FKBP51 in complex with 2-(3-((R)-1-(((S)-1-((S)-2-(5-chlorothiophen-2-yl)-2-(3,4,5-trimethoxyphenyl)acetyl)piperidine-2-carbonyl)oxy)-3-(3,4-dimethoxyphenyl)propyl)phenoxy)acetic acid


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4TW7 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29320% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammonium acetate
Crystal Properties
Matthews coefficientSolvent content
2.2445.01

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.556α = 90
b = 48.123β = 90
c = 57.156γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2021-12-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.918400BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.145.5699.90.0780.0930.050.99912.86.17751
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.160.740.8750.4620.8716.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4TW72.133.105772038499.780.2280.22530.272245.756
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
7.634-3.437-4.197
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg18.498
r_dihedral_angle_3_deg16.037
r_dihedral_angle_1_deg8.912
r_dihedral_angle_2_deg7.86
r_lrange_it6.205
r_lrange_other6.203
r_mcangle_it4.699
r_mcangle_other4.695
r_scangle_it4.456
r_scangle_other4.453
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg18.498
r_dihedral_angle_3_deg16.037
r_dihedral_angle_1_deg8.912
r_dihedral_angle_2_deg7.86
r_lrange_it6.205
r_lrange_other6.203
r_mcangle_it4.699
r_mcangle_other4.695
r_scangle_it4.456
r_scangle_other4.453
r_mcbond_other3.082
r_mcbond_it3.08
r_scbond_it2.921
r_scbond_other2.918
r_angle_refined_deg1.825
r_chiral_restr_other1.524
r_angle_other_deg0.889
r_nbd_refined0.236
r_symmetry_nbd_other0.207
r_nbtor_refined0.191
r_xyhbond_nbd_refined0.179
r_nbd_other0.163
r_symmetry_xyhbond_nbd_refined0.103
r_symmetry_nbd_refined0.093
r_symmetry_nbtor_other0.088
r_chiral_restr0.07
r_bond_refined_d0.011
r_gen_planes_refined0.008
r_bond_other_d0.005
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms929
Nucleic Acid Atoms
Solvent Atoms7
Heterogen Atoms54

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing