8CCE

The Fk1 domain of FKBP51 in complex with 2-(3-((R)-1-(((S)-1-((S)-2-(5-chlorothiophen-2-yl)butanoyl)piperidine-2-carbonyl)oxy)-3-(3,4-dimethoxyphenyl)propyl)phenoxy)acetic acid


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4TW7 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29322% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammonium acetate
Crystal Properties
Matthews coefficientSolvent content
2.2946.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.392α = 90
b = 48.342β = 90
c = 57.276γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2021-12-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.918400BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.446.3998.30.0490.0590.031116.86.325513
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.421.4611.750.9480.7366.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4TW71.436.9725469127697.9280.1990.19770.233722.432
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.652-2.895-1.757
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg19.188
r_dihedral_angle_3_deg12.999
r_dihedral_angle_1_deg8.032
r_lrange_it6.086
r_lrange_other6.028
r_dihedral_angle_2_deg4.246
r_scangle_it3.158
r_scangle_other3.156
r_scbond_it2.079
r_scbond_other2.078
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg19.188
r_dihedral_angle_3_deg12.999
r_dihedral_angle_1_deg8.032
r_lrange_it6.086
r_lrange_other6.028
r_dihedral_angle_2_deg4.246
r_scangle_it3.158
r_scangle_other3.156
r_scbond_it2.079
r_scbond_other2.078
r_mcangle_it2.023
r_mcangle_other2.021
r_angle_refined_deg2.001
r_mcbond_it1.371
r_mcbond_other1.371
r_angle_other_deg0.737
r_chiral_restr_other0.692
r_symmetry_xyhbond_nbd_refined0.313
r_nbd_refined0.209
r_symmetry_nbd_other0.194
r_xyhbond_nbd_refined0.189
r_nbtor_refined0.184
r_symmetry_nbd_refined0.132
r_nbd_other0.131
r_chiral_restr0.094
r_symmetry_nbtor_other0.086
r_bond_refined_d0.013
r_gen_planes_refined0.013
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms923
Nucleic Acid Atoms
Solvent Atoms97
Heterogen Atoms50

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing