Experiment: 8CM6

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	8CM5

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	8	293	34% PEG 3350, 0.1M Tris-HCl pH 8.0, 1M LiCl

Crystal Properties
Matthews coefficient	Solvent content
2.35	47.72

Symmetry
Space Group	P 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2021-12-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-1	0.7749	ESRF	ID23-1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.416	117.57	92.3	0.997	8.01	2		346803

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.416	1.54			0.658

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.416	117.57	346803	17188	75.752	0.15	0.1485	0.1757	18.1

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.066	-0.058	0.01	-0.059	-0.016	-0.039

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.203
r_dihedral_angle_4_deg	19.681
r_dihedral_angle_3_deg	13.006
r_dihedral_angle_1_deg	6.927
r_lrange_it	4.461
r_lrange_other	4.461
r_scangle_it	3.608
r_scangle_other	3.608
r_scbond_it	2.403
r_scbond_other	2.403

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.203
r_dihedral_angle_4_deg	19.681
r_dihedral_angle_3_deg	13.006
r_dihedral_angle_1_deg	6.927
r_lrange_it	4.461
r_lrange_other	4.461
r_scangle_it	3.608
r_scangle_other	3.608
r_scbond_it	2.403
r_scbond_other	2.403
r_mcangle_it	1.977
r_mcangle_other	1.977
r_angle_refined_deg	1.696
r_angle_other_deg	1.475
r_mcbond_it	1.398
r_mcbond_other	1.398
r_symmetry_nbd_refined	0.219
r_nbd_refined	0.213
r_symmetry_nbd_other	0.182
r_nbtor_refined	0.174
r_nbd_other	0.167
r_symmetry_xyhbond_nbd_refined	0.16
r_xyhbond_nbd_refined	0.133
r_symmetry_xyhbond_nbd_other	0.109
r_chiral_restr	0.097
r_xyhbond_nbd_other	0.093
r_symmetry_nbtor_other	0.083
r_bond_refined_d	0.011
r_gen_planes_refined	0.011
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	18544
Nucleic Acid Atoms
Solvent Atoms	1718
Heterogen Atoms	438