X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 8GKO 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION289polyethyleneglycol 550 monomethylether, polyethyleneglycol 20,000, MES/Imidazole
Crystal Properties
Matthews coefficientSolvent content
1.9641.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.092α = 90
b = 75.218β = 101.39
c = 87.929γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MFlat Si Rh coated M0, Kirkpatrick-Baez flat bent Si M1 & M22021-10-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL12-20.97946SSRLBL12-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5586.19797.30.0640.0740.03710.93.99184791847
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Rrim I (All)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.6395.60.9450.9451.0990.5530.83.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.5530.287267454697.080.15560.15290.2065RANDOM24.11
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.5-0.090.08-0.5
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.779
r_sphericity_free22.578
r_dihedral_angle_4_deg18.082
r_dihedral_angle_3_deg13.73
r_sphericity_bonded11.662
r_dihedral_angle_1_deg6.189
r_rigid_bond_restr3.309
r_angle_refined_deg1.515
r_chiral_restr0.121
r_bond_refined_d0.013
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.779
r_sphericity_free22.578
r_dihedral_angle_4_deg18.082
r_dihedral_angle_3_deg13.73
r_sphericity_bonded11.662
r_dihedral_angle_1_deg6.189
r_rigid_bond_restr3.309
r_angle_refined_deg1.515
r_chiral_restr0.121
r_bond_refined_d0.013
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5542
Nucleic Acid Atoms
Solvent Atoms414
Heterogen Atoms68

Software

Software
Software NamePurpose
XDSdata reduction
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing