X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5E2E 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52930.1 M TRIS hydrochloride pH 8.5, 2.0 M Ammonium phosphate monobasic
Crystal Properties
Matthews coefficientSolvent content
2.2463138145.2776413

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.45α = 90
b = 72.647β = 94.302
c = 43.887γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELRIGAKU HyPix-6000HEX ray optics2022-03-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.541838

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.428.1699.90.130.150.0720.9929.97.611023
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.4999.90.2840.3260.1550.9737.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2.428.161102256799.8280.1610.15740.23522.945
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.4571.879-2.379-2.335
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.104
r_dihedral_angle_3_deg15.27
r_dihedral_angle_2_deg8.902
r_lrange_it7.448
r_lrange_other7.148
r_dihedral_angle_1_deg6.619
r_scangle_it4.377
r_scangle_other4.201
r_mcangle_it2.817
r_mcangle_other2.816
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.104
r_dihedral_angle_3_deg15.27
r_dihedral_angle_2_deg8.902
r_lrange_it7.448
r_lrange_other7.148
r_dihedral_angle_1_deg6.619
r_scangle_it4.377
r_scangle_other4.201
r_mcangle_it2.817
r_mcangle_other2.816
r_scbond_it2.652
r_scbond_other2.541
r_mcbond_it1.817
r_mcbond_other1.817
r_angle_refined_deg1.427
r_angle_other_deg0.467
r_symmetry_xyhbond_nbd_refined0.255
r_nbd_refined0.221
r_xyhbond_nbd_refined0.217
r_nbd_other0.203
r_symmetry_nbd_other0.2
r_nbtor_refined0.18
r_symmetry_nbd_refined0.18
r_symmetry_nbtor_other0.08
r_xyhbond_nbd_other0.072
r_chiral_restr0.062
r_symmetry_xyhbond_nbd_other0.048
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1992
Nucleic Acid Atoms
Solvent Atoms210
Heterogen Atoms10

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
CrysalisProdata collection
Aimlessdata scaling
MOLREPphasing