X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4TW7 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529332% PEG 3350, 0.2M NH4-acetate, 0.1 M HEPES-NaOH pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.0540.01

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.063α = 90
b = 48.541β = 90
c = 56.031γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2023-01-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.918400BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.642.0699.70.0830.0940.0430.99914.98.515660
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.631.5361.7370.8010.5278.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.636.7151561577999.4590.1870.1860.210524.129
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.949-1.304-0.645
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg16.686
r_dihedral_angle_6_deg15.877
r_dihedral_angle_3_deg11.915
r_dihedral_angle_1_deg8.241
r_lrange_other5.341
r_lrange_it5.333
r_scangle_it3.552
r_scangle_other3.55
r_mcangle_it2.899
r_mcangle_other2.897
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg16.686
r_dihedral_angle_6_deg15.877
r_dihedral_angle_3_deg11.915
r_dihedral_angle_1_deg8.241
r_lrange_other5.341
r_lrange_it5.333
r_scangle_it3.552
r_scangle_other3.55
r_mcangle_it2.899
r_mcangle_other2.897
r_scbond_it2.235
r_scbond_other2.233
r_mcbond_it1.744
r_mcbond_other1.743
r_angle_refined_deg1.726
r_chiral_restr_other1.345
r_angle_other_deg1.206
r_nbd_refined0.412
r_symmetry_nbd_refined0.204
r_nbd_other0.198
r_symmetry_nbd_other0.195
r_nbtor_refined0.181
r_xyhbond_nbd_refined0.177
r_symmetry_xyhbond_nbd_refined0.138
r_symmetry_nbtor_other0.081
r_chiral_restr0.076
r_bond_refined_d0.011
r_gen_planes_refined0.01
r_bond_other_d0.005
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms940
Nucleic Acid Atoms
Solvent Atoms54
Heterogen Atoms70

Software

Software
Software NamePurpose
REFMACrefinement
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing