☰ Navigation Tabs
Se-Met labelled TtX122A - A domain of unknown function from the Teredinibacter turnerae protein TERTU_3803
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 292 0.1 M magnesium acetate, 15-25% PEG-3350
Crystal Properties Matthews coefficient Solvent content 2.19 43.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.004 α = 90 b = 75.443 β = 107.62 c = 69.751 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-06-28 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97982, 0.98000, 0.96450 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 49.88 99.6 0.09 0.111 0.065 0.992 20.8 6 43829
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 0.278 0.364 0.232 0.912 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 49.88 43808 2157 99.53 0.159 0.1569 0.1644 0.2022 0.2089 19.913
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.273 1.425 -0.796 -0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.406 r_dihedral_angle_3_deg 12.48 r_dihedral_angle_2_deg 9.536 r_dihedral_angle_1_deg 8.444 r_lrange_it 6.009 r_lrange_other 6.009 r_scangle_it 4.717 r_scangle_other 4.716 r_mcangle_it 3.472 r_mcangle_other 3.472
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.406 r_dihedral_angle_3_deg 12.48 r_dihedral_angle_2_deg 9.536 r_dihedral_angle_1_deg 8.444 r_lrange_it 6.009 r_lrange_other 6.009 r_scangle_it 4.717 r_scangle_other 4.716 r_mcangle_it 3.472 r_mcangle_other 3.472 r_scbond_it 3.457 r_scbond_other 3.457 r_mcbond_it 2.811 r_mcbond_other 2.745 r_angle_refined_deg 2.119 r_angle_other_deg 0.744 r_nbd_other 0.221 r_nbd_refined 0.208 r_symmetry_nbd_other 0.202 r_nbtor_refined 0.182 r_symmetry_xyhbond_nbd_refined 0.162 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.113 r_symmetry_nbd_refined 0.106 r_metal_ion_refined 0.096 r_symmetry_nbtor_other 0.092 r_bond_refined_d 0.016 r_gen_planes_refined 0.014 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3749 Nucleic Acid Atoms Solvent Atoms 391 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement Aimless data scaling SHELX phasing XDS data reduction