8R1V

Pseudomonas aeruginosa FabF C164A in complex with N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)-2-(4-methoxyphenoxy)acetamide


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherIn-house determined apo structure

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2980.24M ammonium formate and 35% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.1643.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.947α = 90
b = 104.339β = 90
c = 144.117γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 9M2023-09-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID30B0.8731ESRFID30B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.08772.65599.80.9936.26.745462
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.092.1497.70.4366.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2.08772.65545428247299.7940.1920.18890.254241.496
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.660.8910.769
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_other_2_deg49.717
r_dihedral_angle_2_deg19.154
r_dihedral_angle_6_deg15.605
r_dihedral_angle_3_deg15.187
r_lrange_other8.982
r_lrange_it8.98
r_scangle_it7.593
r_scangle_other7.592
r_dihedral_angle_1_deg7.563
r_scbond_it5.338
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_other_2_deg49.717
r_dihedral_angle_2_deg19.154
r_dihedral_angle_6_deg15.605
r_dihedral_angle_3_deg15.187
r_lrange_other8.982
r_lrange_it8.98
r_scangle_it7.593
r_scangle_other7.592
r_dihedral_angle_1_deg7.563
r_scbond_it5.338
r_scbond_other5.338
r_mcangle_it5.172
r_mcangle_other5.172
r_mcbond_it4.023
r_mcbond_other4.023
r_angle_refined_deg2.108
r_angle_other_deg0.911
r_nbd_refined0.182
r_nbtor_refined0.155
r_symmetry_nbd_other0.139
r_xyhbond_nbd_refined0.116
r_chiral_restr0.107
r_symmetry_xyhbond_nbd_refined0.094
r_nbd_other0.086
r_symmetry_nbd_refined0.081
r_ncsr_local_group_10.077
r_symmetry_nbtor_other0.071
r_bond_refined_d0.013
r_gen_planes_refined0.012
r_bond_other_d0.005
r_gen_planes_other0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6058
Nucleic Acid Atoms
Solvent Atoms113
Heterogen Atoms83

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing