9F7K

Glutathione transferase epsilon 1 from Drosophila melanogaster in complex with glutathione


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2IMI 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP27720 % w/v PEG 8000, 100 mM MES pH 6.0 and 200 mM Ca acetate
Crystal Properties
Matthews coefficientSolvent content
3.2161.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.038α = 90
b = 82.919β = 90
c = 95.543γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2019-12-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 21.14071SOLEILPROXIMA 2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.841.4699.20.054117.56.660131
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8499.70.8120.72.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.841.45960131305399.6850.1550.15370.176629.064
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.3231.067-0.744
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.804
r_dihedral_angle_3_deg14.718
r_lrange_it8.266
r_lrange_other8.233
r_scangle_it7.516
r_scangle_other7.514
r_dihedral_angle_2_deg6.37
r_dihedral_angle_1_deg5.751
r_scbond_it5.123
r_scbond_other5.122
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.804
r_dihedral_angle_3_deg14.718
r_lrange_it8.266
r_lrange_other8.233
r_scangle_it7.516
r_scangle_other7.514
r_dihedral_angle_2_deg6.37
r_dihedral_angle_1_deg5.751
r_scbond_it5.123
r_scbond_other5.122
r_mcangle_it3.685
r_mcangle_other3.684
r_mcbond_it2.888
r_mcbond_other2.874
r_angle_refined_deg1.662
r_angle_other_deg0.573
r_symmetry_xyhbond_nbd_refined0.233
r_nbd_refined0.22
r_nbtor_refined0.184
r_symmetry_nbd_other0.181
r_nbd_other0.133
r_xyhbond_nbd_refined0.132
r_chiral_restr0.1
r_symmetry_nbd_refined0.085
r_symmetry_nbtor_other0.075
r_ncsr_local_group_10.072
r_bond_refined_d0.011
r_gen_planes_refined0.01
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3482
Nucleic Acid Atoms
Solvent Atoms208
Heterogen Atoms94

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
BALBESphasing