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Crystal Structure of UFC1 C116E
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z6O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.1 M Bis-Tris, pH 5.5, 1.8 M smmonium sulfate.
Crystal Properties Matthews coefficient Solvent content 1.99 38.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.727 α = 90 b = 46.727 β = 90 c = 143.465 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS EIGER X 9M 2024-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87313 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 44.43 97.98 0.05498 0.998 9.8 2 12645 19.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 1.989 100 0.2169 0.932 3.7 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.92 44.43 12645 653 97.993 0.185 0.1824 0.1948 0.2274 0.2352 18.611
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.331 -0.331 0.662
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.422 r_dihedral_angle_4_deg 13.339 r_dihedral_angle_3_deg 12.646 r_dihedral_angle_1_deg 6.461 r_lrange_it 5.042 r_lrange_other 4.856 r_scangle_it 3.701 r_scangle_other 3.664 r_scbond_it 2.373 r_scbond_other 2.336
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.422 r_dihedral_angle_4_deg 13.339 r_dihedral_angle_3_deg 12.646 r_dihedral_angle_1_deg 6.461 r_lrange_it 5.042 r_lrange_other 4.856 r_scangle_it 3.701 r_scangle_other 3.664 r_scbond_it 2.373 r_scbond_other 2.336 r_mcangle_it 1.968 r_mcangle_other 1.968 r_angle_refined_deg 1.538 r_angle_other_deg 1.413 r_mcbond_it 1.405 r_mcbond_other 1.401 r_symmetry_nbd_refined 0.226 r_nbd_refined 0.208 r_nbd_other 0.196 r_symmetry_nbd_other 0.194 r_nbtor_refined 0.17 r_symmetry_xyhbond_nbd_refined 0.151 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.089 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1322 Nucleic Acid Atoms Solvent Atoms 165 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling Coot model building