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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog p5(1,2)-H2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 20% PEG3350, 0.2M ammonium thiocyanate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.39 48.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.843 α = 90 b = 48.843 β = 90 c = 194.255 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 48.56 99.9 0.043 0.048 0.02 0.999 22 10.6 22952
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.88 1.92 98.3 1.362 1.516 0.655 0.637 1.6 9.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.88 42.335 22884 1139 99.856 0.241 0.2393 0.24 0.2737 0.2721 57.493
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.097 -0.049 -0.097 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.755 r_dihedral_angle_3_deg 12.931 r_dihedral_angle_1_deg 8.124 r_lrange_other 6.259 r_lrange_it 6.256 r_dihedral_angle_2_deg 5.932 r_scangle_it 4.07 r_scangle_other 4.068 r_mcangle_it 3.789 r_mcangle_other 3.788
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.755 r_dihedral_angle_3_deg 12.931 r_dihedral_angle_1_deg 8.124 r_lrange_other 6.259 r_lrange_it 6.256 r_dihedral_angle_2_deg 5.932 r_scangle_it 4.07 r_scangle_other 4.068 r_mcangle_it 3.789 r_mcangle_other 3.788 r_scbond_it 2.975 r_scbond_other 2.973 r_mcbond_it 2.811 r_mcbond_other 2.809 r_chiral_restr_other 1.897 r_angle_refined_deg 1.85 r_angle_other_deg 1.309 r_symmetry_nbd_refined 0.327 r_nbd_other 0.232 r_nbd_refined 0.202 r_symmetry_nbd_other 0.201 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.152 r_ncsr_local_group_1 0.114 r_symmetry_xyhbond_nbd_refined 0.094 r_chiral_restr 0.093 r_symmetry_nbtor_other 0.09 r_symmetry_xyhbond_nbd_other 0.03 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.007 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1853 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing