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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog m5(2,3)-(E)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.39 48.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.676 α = 90 b = 48.676 β = 90 c = 195.689 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2023-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 48.92 100 0.048 0.053 0.022 1 25 10.7 26052
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.84 100 0.387 0.424 0.172 0.965 5.5 11.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 42.19 25982 1298 99.965 0.197 0.1953 0.2256 0.2268 30.989
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.629 -0.315 -0.629 2.041
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.206 r_dihedral_angle_6_deg 15.524 r_dihedral_angle_3_deg 14.403 r_dihedral_angle_1_deg 7.851 r_lrange_it 6.323 r_lrange_other 6.255 r_scangle_it 3.798 r_scangle_other 3.796 r_mcangle_it 2.981 r_mcangle_other 2.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.206 r_dihedral_angle_6_deg 15.524 r_dihedral_angle_3_deg 14.403 r_dihedral_angle_1_deg 7.851 r_lrange_it 6.323 r_lrange_other 6.255 r_scangle_it 3.798 r_scangle_other 3.796 r_mcangle_it 2.981 r_mcangle_other 2.98 r_scbond_it 2.637 r_scbond_other 2.635 r_angle_refined_deg 2.325 r_mcbond_it 2.156 r_mcbond_other 2.152 r_angle_other_deg 0.799 r_symmetry_nbd_refined 0.3 r_symmetry_xyhbond_nbd_refined 0.281 r_nbd_refined 0.216 r_nbd_other 0.194 r_symmetry_nbd_other 0.191 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.176 r_chiral_restr 0.114 r_ncsr_local_group_1 0.105 r_symmetry_nbtor_other 0.096 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1866 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing