TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 1N5J designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 1N5J_TYD_A_218 | 75% | 11% | 0.12 | 0.959 | 1.53 | 2.48 | 4 | 2 | 0 | 0 | 100% | 0.54 |
| 1GTV_TYD_A_302 | 89% | 11% | 0.09 | 0.974 | 1.53 | 2.48 | 4 | 2 | 1 | 0 | 100% | 0.48 |
| 1N5L_TYD_B_216 | 45% | 10% | 0.155 | 0.888 | 1.78 | 2.43 | 4 | 3 | 1 | 0 | 100% | 1 |
| 3OTI_TYD_B_377 | 98% | 21% | 0.054 | 0.987 | 1.12 | 2.08 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 98% | 30% | 0.057 | 0.988 | 1 | 1.68 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 97% | 31% | 0.06 | 0.987 | 0.99 | 1.64 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EM1_TYD_B_143 | 97% | 29% | 0.059 | 0.984 | 1.01 | 1.71 | 1 | 3 | 0 | 0 | 100% | 1 |
| 3RSC_TYD_A_397 | 97% | 37% | 0.055 | 0.977 | 0.74 | 1.61 | 1 | 3 | 0 | 0 | 100% | 1 |
