GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 1Y3A designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 1Y3A_GDP_D_358 | 56% | 14% | 0.175 | 0.947 | 1.61 | 2.22 | 6 | 9 | 3 | 0 | 100% | 1 |
| 1Y3A_GDP_A_355 | 52% | 14% | 0.184 | 0.943 | 1.61 | 2.21 | 5 | 9 | 2 | 0 | 100% | 1 |
| 1Y3A_GDP_C_357 | 52% | 15% | 0.177 | 0.934 | 1.54 | 2.24 | 4 | 8 | 3 | 0 | 100% | 1 |
| 1Y3A_GDP_B_356 | 50% | 13% | 0.184 | 0.937 | 1.72 | 2.2 | 7 | 9 | 2 | 0 | 100% | 1 |
| 1AS2_GDP_A_355 | 96% | 8% | 0.078 | 0.99 | 1.43 | 3.07 | 5 | 12 | 0 | 0 | 100% | 1 |
| 4PAN_GDP_A_401 | 96% | 24% | 0.079 | 0.988 | 1.21 | 1.9 | 3 | 7 | 0 | 0 | 100% | 1 |
| 1AS3_GDP_A_355 | 95% | 15% | 0.084 | 0.988 | 1.47 | 2.25 | 5 | 5 | 3 | 0 | 100% | 1 |
| 3UMR_GDP_A_400 | 94% | 48% | 0.08 | 0.98 | 1.03 | 0.99 | 1 | 3 | 0 | 0 | 100% | 1 |
| 1SVK_GDP_A_355 | 88% | 31% | 0.086 | 0.96 | 1.49 | 1.26 | 6 | 3 | 0 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 4PZZ_GDP_A_201 | 100% | 54% | 0.035 | 0.989 | 0.92 | 0.86 | 1 | 1 | 0 | 0 | 100% | 1 |
