Ligand validation:2GPT

SKM: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID

SKM is a Ligand Of Interest in 2GPT designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2GPT_SKM_A_4733	70%	50%	0.132	0.949	1.18	0.75	2	-	1	0	100%	1
6BMB_SKM_A_704	56%	33%	0.169	0.942	1.62	1.04	2	-	1	0	100%	1
2AA9_SKM_A_501	99%	27%	0.047	0.982	1.79	1.18	2	2	0	0	100%	1
3NVS_SKM_A_428	98%	11%	0.061	0.984	2.58	1.66	1	3	4	0	100%	0.4
2AAY_SKM_A_701	95%	30%	0.063	0.967	1.66	1.14	2	2	0	0	100%	1
3TNL_SKM_A_293	95%	48%	0.065	0.967	0.83	1.15	-	1	0	0	100%	1
5TED_SKM_A_401	94%	2%	0.08	0.977	5.86	1.19	6	2	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.