2VD8
PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 2VD8 designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2VD8_PLP_A_1041 | 97% | 28% | 0.064 | 0.981 | 1.61 | 1.27 | 2 | 2 | 0 | 0 | 100% | 1 |
| 2VD8_PLP_B_1041 | 94% | 25% | 0.074 | 0.971 | 1.71 | 1.36 | 2 | 3 | 0 | 0 | 100% | 1 |
| 1EKV_PLP_A_370 | 100% | 19% | 0.019 | 0.998 | 2 | 1.45 | 5 | 4 | 1 | 0 | 94% | 1 |
| 2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 1 |
| 4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
| 3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 1 |
| 4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 1 |
