UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 2VL8 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2VL8_UDP_A_1543 | 90% | 34% | 0.088 | 0.969 | 0.92 | 1.67 | 1 | 7 | 0 | 0 | 100% | 1 |
| 2VL8_UDP_C_1543 | 81% | 32% | 0.116 | 0.97 | 0.86 | 1.81 | 1 | 7 | 0 | 0 | 100% | 1 |
| 2VL8_UDP_B_1543 | 77% | 35% | 0.112 | 0.95 | 0.95 | 1.6 | 1 | 5 | 0 | 0 | 100% | 1 |
| 8X3Q_UDP_A_401 | 100% | 3% | 0.021 | 0.996 | 3.31 | 2.67 | 13 | 13 | 1 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 42% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
