UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3O3C designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3O3C_UDP_A_901 | 26% | 29% | 0.273 | 0.928 | 1.09 | 1.62 | 2 | 6 | 2 | 0 | 100% | 1 |
| 3O3C_UDP_C_901 | 25% | 29% | 0.261 | 0.908 | 0.95 | 1.76 | 1 | 7 | 4 | 0 | 100% | 1 |
| 3O3C_UDP_B_901 | 23% | 29% | 0.279 | 0.913 | 1.01 | 1.7 | - | 6 | 2 | 0 | 100% | 1 |
| 3O3C_UDP_D_901 | 22% | 29% | 0.29 | 0.923 | 0.94 | 1.76 | - | 7 | 3 | 0 | 100% | 1 |
| 4KQM_UDP_D_801 | 79% | 31% | 0.125 | 0.976 | 0.92 | 1.69 | 1 | 6 | 0 | 0 | 100% | 1 |
| 5UW0_UDP_D_801 | 66% | 31% | 0.134 | 0.943 | 1.01 | 1.64 | 2 | 6 | 0 | 0 | 100% | 1 |
| 5UW4_UDP_C_802 | 64% | 38% | 0.161 | 0.963 | 0.96 | 1.36 | 1 | 5 | 1 | 0 | 100% | 1 |
| 5VNC_UDP_D_801 | 58% | 31% | 0.145 | 0.925 | 1.1 | 1.56 | 3 | 5 | 0 | 0 | 100% | 1 |
| 5SUL_UDP_A_801 | 53% | 27% | 0.18 | 0.944 | 0.99 | 1.81 | 1 | 7 | 5 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.3 | 2.73 | 13 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_B_704 | 100% | 57% | 0.03 | 0.994 | 0.59 | 0.91 | - | 1 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 40% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 4GYW_UDP_C_1101 | 99% | 34% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
