UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3T7M designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3T7M_UDP_B_264 | 96% | 37% | 0.053 | 0.972 | 0.96 | 1.4 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3T7M_UDP_A_264 | 94% | 36% | 0.06 | 0.965 | 0.98 | 1.43 | 1 | 6 | 0 | 0 | 100% | 1 |
| 3U2W_UDP_A_264 | 100% | 41% | 0.033 | 0.989 | 0.75 | 1.41 | - | 3 | 2 | 0 | 100% | 1 |
| 3U2V_UDP_B_270 | 99% | 25% | 0.036 | 0.989 | 1.45 | 1.51 | 4 | 5 | 0 | 0 | 100% | 1 |
| 3U2U_UDP_A_268 | 99% | 33% | 0.04 | 0.986 | 1.32 | 1.23 | 4 | 3 | 0 | 0 | 100% | 1 |
| 3RMV_UDP_A_264 | 99% | 24% | 0.042 | 0.982 | 1.37 | 1.61 | 4 | 5 | 0 | 0 | 100% | 1 |
| 3U2X_UDP_B_264 | 99% | 32% | 0.043 | 0.982 | 1.14 | 1.44 | 2 | 5 | 2 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |
