GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 3VO8 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3VO8_GDP_A_502 | 100% | 25% | 0.032 | 0.993 | 1.15 | 1.78 | 2 | 7 | 0 | 0 | 100% | 1 |
| 3VO8_GDP_B_502 | 99% | 23% | 0.039 | 0.988 | 1.14 | 1.9 | 2 | 8 | 0 | 0 | 100% | 1 |
| 5XDT_GDP_A_401 | 100% | 37% | 0.02 | 0.997 | 1.06 | 1.28 | 2 | 6 | 0 | 0 | 100% | 1 |
| 6YD6_GDP_A_401 | 100% | 34% | 0.022 | 0.996 | 1.02 | 1.48 | 2 | 8 | 0 | 0 | 100% | 1 |
| 7OHK_GDP_A_401 | 99% | 26% | 0.036 | 0.989 | 1.13 | 1.76 | 3 | 9 | 0 | 0 | 100% | 1 |
| 5XDV_GDP_A_401 | 99% | 24% | 0.037 | 0.986 | 1.24 | 1.73 | 3 | 7 | 0 | 0 | 100% | 1 |
| 5MN4_GDP_A_1001 | 99% | 32% | 0.039 | 0.987 | 1.18 | 1.4 | 3 | 7 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 32% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 2CNW_GDP_A_1001 | 100% | 24% | 0.014 | 0.998 | 1.16 | 1.84 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 26% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
| 5V9L_GDP_A_201 | 100% | 35% | 0.014 | 0.998 | 1.01 | 1.42 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_K_401 | 100% | 25% | 0.015 | 0.999 | 1.16 | 1.76 | 3 | 7 | 0 | 0 | 100% | 1 |
