UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 4FRA designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4FRA_UDP_A_401 | 2% | 13% | 0.287 | 0.584 | 1.81 | 2.12 | 6 | 12 | 1 | 0 | 100% | 0.712 |
6GX2_UDP_A_402 | 99% | 52% | 0.053 | 0.989 | 0.86 | 1.01 | - | 2 | 0 | 0 | 100% | 1 |
5M7C_UDP_B_602 | 99% | 34% | 0.053 | 0.984 | 1.11 | 1.49 | - | 6 | 0 | 0 | 100% | 1 |
3V0Q_UDP_B_402 | 96% | 38% | 0.07 | 0.979 | 0.96 | 1.44 | 1 | 6 | 0 | 0 | 100% | 1 |
5M7B_UDP_A_602 | 95% | 41% | 0.077 | 0.98 | 1 | 1.27 | 1 | 5 | 0 | 0 | 100% | 1 |
6GX1_UDP_A_403 | 86% | 34% | 0.085 | 0.952 | 1.04 | 1.55 | 2 | 7 | 1 | 0 | 100% | 0.4 |
4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
1GX4_UDP_A_401 | 100% | 32% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
3U2V_UDP_B_270 | 99% | 33% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
5GY7_UDP_A_401 | 99% | 40% | 0.049 | 0.989 | 1.09 | 1.23 | 1 | 3 | 0 | 0 | 100% | 1 |
6K0G_UDP_A_401 | 99% | 35% | 0.05 | 0.985 | 1.35 | 1.22 | 2 | 5 | 0 | 0 | 100% | 1 |