TYD: THYMIDINE-5'-DIPHOSPHATE

TYD is a Ligand Of Interest in 4HN1 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4HN1_TYD_C_304Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4HN1_TYD_C_304Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4HN1_TYD_C_304 66% 38% 0.114 0.9180.67 1.72 - 310100%1
4HN1_TYD_C_303 64% 40% 0.133 0.9310.65 1.66 - 120100%1
4HN1_TYD_A_305 57% 45% 0.12 0.8960.65 1.44 - 530100%1
4HN1_TYD_B_304 56% 41% 0.119 0.890.67 1.62 - 410100%1
3OTI_TYD_B_377 99% 22% 0.054 0.9871.12 2.08 1 200100%1
3EVO_TYD_A_160 99% 32% 0.057 0.9881 1.68 1 300100%1
5WXK_TYD_A_401 99% 33% 0.06 0.9870.99 1.64 1 200100%1
3EM1_TYD_B_143 98% 31% 0.059 0.9841.01 1.71 1 300100%1
3RSC_TYD_A_397 98% 39% 0.055 0.9770.74 1.61 1 300100%1